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Comparing maps3 years ago
The example map | Comparing optimization runs | Comparing 3D to 2D
Racmacs 1.2.10Sam Wilks comparing-maps.Rmd
Making an antigenic map from titer data3 years ago
Reading in the titer data | Creating the acmap object | Running optimizations | Viewing the map | Using make.acmap()
Racmacs 1.2.10Sam Wilks making-a-map-from-scratch.Rmd
Working with sequence data3 years ago
Adding sequence data | Viewing sequence data | Tutorials
Racmacs 1.2.10Sam Wilks adding-sequences.Rmd
Assessing map uncertainty3 years ago
Assessing uncertainty in an antigenic map | A note on confidence vs actual goodness of fit | Geometric uncertainty and triangulation blobs | Bootstrapping methods | Bootstrapping to assess sample uncertainty | Bootstrapping to assess measurement error uncertainty | Viewing bootstrap results
Racmacs 1.2.10Sam Wilks assessing_map_uncertainty.Rmd
Customising map appearance3 years ago
Main point style functions | An example of styling a map
Racmacs 1.2.10Sam Wilks customising-map-appearance.Rmd
Creating a plot from scratch4 years ago
r3js 0.0.2.9000Sam Wilks plot-from-scratch.Rmd
Getting Started4 years ago
Interactivity | Labels | Roll-over highlighting | Toggle buttons
r3js 0.0.2.9000Sam Wilks getting-started.Rmd
Grouping plot elements4 years ago
r3js 0.0.2.9000Sam Wilks using-groupings.Rmd
Calculating 3d contours5 years ago
A simple usage example
rmarchingcubes 0.1.4S. H. Wilks calculating_3d_contours.Rmd
Merging maps5 years ago
Merge types | "table" | "reoptimized-merge" | "incremental-merge" | "frozen-overlay" | "relaxed-overlay" | "frozen-merge"
Racmacs 1.2.10Sam Wilks merging-maps.Rmd